Package index • gesel

All functions
`cacheDirectory()`	Gesel cache directory
`consolidateBlockSize()`	Block size for consolidation
`createGeneIdentifierMap()`	Create mapping of gene identifiers
`downloadDatabaseFile()` `databaseUrl()`	Download Gesel database files
`downloadDatabaseRanges()`	Fetch byte ranges from a Gesel database file
`downloadGeneFile()` `geneUrl()`	Fetch Gesel gene annotation files
`effectiveNumberOfGenes()`	Effective number of genes
`fetchAllCollections()`	Fetch all gene set collections
`fetchAllGenes()`	Fetch all genes
`fetchAllSets()`	Fetch all gene sets
`fetchCollectionSizes()`	Size of collections
`fetchGeneTypes()`	Fetch available gene identfier types
`fetchGeneVersion()`	Fetch version of the gene annotation files
`fetchGenesForAllSets()`	Fetch genes for all sets
`fetchGenesForSomeSets()`	Fetch genes for some sets
`fetchSetSizes()`	Size of gene sets
`fetchSetsForAllGenes()`	Fetch sets for all genes
`fetchSetsForSomeGenes()`	Fetch sets for some genes
`fetchSomeCollections()`	Fetch some collections
`fetchSomeSets()`	Fetch some sets
`flushMemoryCache()`	Flush the in-memory cache
`loadAllSets()`	Load all gene sets for a species
`newConfig()`	Create a new configuration object
`prepareDatabaseFiles()`	Prepare the Gesel database
`prepareGeneFiles()`	Prepare the Gesel gene annotation files
`querySets()`	Query gene sets
`rangeConcurrency()`	Concurrency of range requests
`readDatabaseRanges()`	Read byte ranges from a Gesel database file
`renameGenesInSets()`	Rename genes in their sets
`searchGenes()`	Search for genes
`searchOverlappingSets()`	Search for overlapping gene sets
`searchSetText()`	Search set text
`validateDatabaseFiles()` `validateGeneFiles()`	Validate Gesel database files

Reference

All functions